Human Whole Genome Sequencing with Analysis


Overview

Offering the $199 human genome

High-quality human whole-genome sequencing with data analysis is available at the UMGC in flexible coverage options (30x, 60x, and 90x). Advances in the Ultima Genomics UG 100 platform enable us to offer the $199 human genome, giving researchers one of the most cost-effective paths to WGS available today (to our knowledge). The UMGC delivers research-grade human WGS on the latest sequencing technologies:
 

  • Ultima UG 100 — population-scale efficiency. The UG 100 is an ultra-high-throughput instrument that processes up to 480 human genomes per week at 30x minimum depth. It enables scalable, high-quality human WGS for large cohorts.
  • Element AVITI24 — exceptional accuracy for precision studies. The AVITI's paired-end chemistry and UltraQ mode deliver exceptional SNV and indel accuracy, making it ideal for clinical research, tumor/normal comparisons, and applications where precision is critical. 

Mouse whole-genome sequencing and data analysis are available at the same rates and sequencing options as human WGS. 

Analysis Quality

InstrumentRead TypeRaw SNV QualityIndel Quality
Ultima UG 100Single-end reads (≈200–300 bp) Q40Good
Element AVITIPaired-end 2x150-bp readsQ40Excellent
Element AVITI Ultra QPaired-end 2x150-bp readsQ50Excellent

What’s Included

  • Sample Quality Control: Rigorous assessment of sample integrity and quantity.
  • Library Creation: PCR-free workflows to maximize coverage uniformity and minimize bias.
  • Next-Generation Sequencing: Sequencing is performed on either the UG 100 or AVITI.
  • Primary Data QC: Comprehensive evaluation of sequencing metrics to verify data completeness and quality prior to analysis.
  • Data Analysis: Includes mapping to the reference genome and variant analysis (including SNVs and indels) with Google DeepVariant and GATK.

Getting Started

The UMGC is a Certified Service Provider for the UG 100 system, one of a few select labs worldwide, and the only academic facility with this distinction. This certification underscores our expertise in delivering high-quality, research-grade human WGS on cutting-edge technology. To discuss a human or mouse WGS project, contact us at [email protected].

Pricing

Pricing for human and mouse whole genome sequencing. Includes sample QC, PCR-free library preparation, 30x sequencing, data QC and analysis.

30x Minimum Coverage

InstrumentBatch SizeCost/sample (UMN)Cost/sample (External)
Ultima UG 10024 samples$171$199
Element AVITI4 samples$325$389
Element AVITI Ultra Q2 samples$799$1,008

60x Mean Coverage

InstrumentBatch SizeCost/sample (UMN)Cost/sample (External)
Ultima UG 100             18 samples$212$244

90x Mean Coverage

InstrumentBatch SizeCost/sample (UMN)Cost/sample (External)
Ultima UG 100             12 samples$292$333


For projects that need customized coverage, such as ultra-deep sequencing and de novo assemblies, or special WGS projects with non-standard experimental design or accelerated timelines, we offer library preparation and sequencing priced separately.

Submission

Fill out the NGS sample submission form and email the completed form to [email protected]

Campus drop-off locations: 

Shipping address: 

UMN Genomics Center
ATTN: NGS Staff
3510 Hopkins Place N.
Building 4 Suite W402
Oakdale, MN 55128
612-625-7736

Please send the tracking information to [email protected].